24. Pyrimidine, piridazine, pirazine-structure. Biologically active substances with pyrimidine ring – pyrimidine bases, nucleotides, vitamins and medicines.
Topic 24 of 25 in the MU Plovdiv syllabus for Chemistry (Dental Medicine, Year 1). The free AceMed note covers it in 8 sections, about 759 words (5 min of reading), with 23 flashcards.
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Heterocyclic compounds with two nitrogen atoms. (1,3-diazole). Structure.
acid-base properties
Tautomerism in imidazole derivatives. Histidine and histamine.
Antihistamines.
Pyrimidine (1,3-diazine).
N-Alkylation (reaction with iodomethane).
Pyrimidine bases: cytosine, uracil and thymine.
Caffeine.
Heterocyclic compounds with two nitrogen atoms. (1,3-diazole). Structure.
Structure:
Imidazole is a five-membered heterocyclic compound, also known as 1,3-diazole.
It contains two nitrogen atoms and three carbon atoms in a ring structure.
Properties:
Aromatic: Imidazole exhibits aromatic character due to its cyclic structure and electron delocalization.
Amphoteric: Imidazole can act as both an acid (H+ donor) and a base (H+ acceptor) due to the presence of two nitrogens with different properties.
One nitrogen atom (N1) can donate a proton (acidic).
The other nitrogen atom (N2) lacks a lone pair and cannot accept a proton (not basic).
Reactions:
Imidazole can undergo substitution reactions (SN2 mechanism) at positions 4 and 5 of the ring.
Tautomerism in imidazole derivatives. Histidine and histamine.
Tautomerism: Imagine a molecule that can exist in two very similar forms, like a shape-shifter. These forms, called tautomers, share the same atoms but have a flipped proton and its electron pair within the molecule.
Imidazole: This five-membered ring with two nitrogens is particularly good at this shape-shifting due to the presence of a lone pair on one nitrogen.
The Flip: The lone pair can attract a proton from the other nitrogen, creating two possible forms:
N-H Tautomer: Proton sits on a specific nitrogen (N).
N+ Tautomer: Proton is on the other nitrogen, with a positive charge (N+).
Fast Change: These forms are constantly switching back and forth, making it difficult to isolate one form.
Why It Matters: Tautomerism affects the reactivity of imidazole derivatives and plays a role in the function of biomolecules like histidine.
Histidine:
Amino Acid: Histidine is an essential amino acid, meaning your body can't produce it and needs to obtain it from food.
Structure: It has a unique structure with an imidazole ring (a five-membered ring containing two nitrogens) attached to its central carbon backbone.
Histamine:
Biogenic Amine: Histamine is a signaling molecule with various functions in the body.
Neurotransmitter: It acts as a neurotransmitter in the brain, involved in sleep-wake regulation, learning, and memory.
Immune Response: Histamine also plays a crucial role in the immune response, especially allergic reactions. It triggers inflammation, itching, and mucus production when released by immune cells.
Symptoms: When released excessively during allergic reactions, histamine can cause:
Diarrhea
Headache
Asthma
Hypotension (low blood pressure)
Treatment: These symptoms can be alleviated by antihistamines, medications that block histamine receptors.
Synthesis: Histamine is formed by a simple process called decarboxylation, where a carboxyl group (COOH) is removed from histidine by an enzyme.
The Connection:
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