Genetics · MU Sofia

59. Pharmacogenetics and pharmacogenomics. Polymorphic monogenic pharmacogenetic defects. CYP450 superfamily variants: CYP2D6, CYP2C9, CYP2C19, CYP3A4. FGD in individuals with genetic diseases.

Covers how polymorphisms in cytochrome P450 genes change drug response, starting with the CYP450 system and metabolizer phenotypes from poor to ultrarapid. It then goes through CYP2D6, CYP2C9, CYP2C19 and CYP3A4 in turn, each with its drugs, pathophysiology and clinical examples, and closes with a comparison table and a section on drug response in inherited genetic diseases.

Inside: 9 sections · 10 labelled pictures · 3 tables · 12 flashcards · 4 min

Topic 59 of 65 in the MU Sofia syllabus for Genetics (Medicine, Year 3). The free AceMed note covers it in 9 sections, about 502 words (4 min of reading), with 12 flashcards.

In this note

  1. Pharmacogenetics and pharmacogenomics. Polymorphic monogenic pharmacogenetic defects. CYP450 superfamily variants: CYP2D6, CYP2C9, CYP2C19, CYP3A4. FGD in individuals with genetic diseases.
  2. I. GENERAL OVERVIEW
  3. II. CYP450 SUPERFAMILY – GENERAL CHARACTERISTICS
  4. III. CYP2D6
  5. IV. CYP2C9
  6. V. CYP2C19
  7. VI. CYP3A4
  8. VII. COMPARISON OF MAJOR CYP VARIANTS
  9. VIII. FGD – PHARMACOGENETICS IN INDIVIDUALS WITH GENETIC DISEASES

I. GENERAL OVERVIEW

Many clinically important differences in drug response are caused by polymorphisms in genes encoding cytochrome P450 (CYP450) enzymes. These enzymes are responsible for the phase I metabolism of most commonly used drugs.

Because these polymorphisms are common in the population, they represent polymorphic monogenic pharmacogenetic defects.

II. CYP450 SUPERFAMILY – GENERAL CHARACTERISTICS

What is the CYP450 system?

The cytochrome P450 (CYP450) enzymes are a superfamily of heme-containing monooxygenases, primarily located in the liver, that catalyze:

  • oxidation,
  • reduction,
  • hydroxylation of drugs and xenobiotics.

Why CYP polymorphisms matter

Genetic variation in CYP genes leads to different metabolic phenotypes, which directly affect:

  • plasma drug levels,
  • efficacy,
  • toxicity,
  • risk of adverse drug reactions.

Metabolizer Phenotypes

III. CYP2D6

CYP2D6 metabolizes ~25% of commonly prescribed drugs, despite representing a small proportion of hepatic CYP enzymes.

Drugs Metabolized by CYP2D6

  • Antidepressants (TCAs, SSRIs)
  • Antipsychotics
  • Beta-blockers
  • Opioids (codeine, tramadol)
  • Antiarrhythmics

Genetic Variability

  • Gene deletions → poor metabolizers
  • Gene duplications → ultrarapid metabolizers

Pathophysiology

  1. 1. CYP2D6 activity determines drug activation or inactivation.
  2. 2. Poor metabolizers accumulate parent drug → toxicity.
  1. 3. Ultrarapid metabolizers clear drug rapidly or overproduce active metabolites.

Clinical Examples

  • Codeine:
  • PM → inadequate analgesia
  • UM → excessive morphine production → toxicity
  • Antidepressants → increased side effects in PMs

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